External Oryza Resources:TIGR/Michigan State University: IRGSP International Rice Genome Gramene: Functional Categorization sites: KEGG - Kyoto Encyclopedia of Genes KOME - Knowledge-based Oryza Korea Rice Genome Database NCBI (& GenBank): OsGDB Oryza sativa Genome Database Oryzabase Integrated Rice Science Database PlantPAN Plant Promoter Analysis Navigator PLEXdb (Plant Expression Database)
MGOS Magnaporthe Grisea Oryza Sativa OMAP Oryza Map Alignment Project Educational Information: |
Internal Onsite Resources:
Lexicon to Osa1 primary descriptions in the MSU (v7) annotation (with number of matches in Affy and genome). |
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![]() External 57K GeneChipTM Resources:AFFYMETRIX selected resources:
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Some Papers Using the Affymetrix 57K Rice Genome GeneChipTM:
*The Affymetrix 57K Rice Genome GeneChipTM has 57,381 probe sets (including 187 control probe sets); it has also been called the 51K chip, in reference to the 51,279 transcripts that Affymetrix used to construct the chip. Of these, 54,168 probe sets represent the O. sativa japonica cultivar group and 1,347 represent the O. sativa indica cultivar group. | ||
![]() Rice diversity, courtesy IRRI image collection |
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